Design of green buildings involves specific processes compared to conventional construction projects that require participation of several disciplines. Having particular activities, functions, and physical aspects, green buildings impose their own difficulties during design. Building Information Modelling systems (BIM) use different software for virtual simulation of characteristics of projects, which promotes early detection of potential problems even before production of the intended design details. Implementing BIM technology in design stage, not only helps to minimize design problems, but also to shorten the stage itself. With this effect of BIM combined with sustainable practices and energy efficient technologies, design stage alone can be considered as a sustainable application of construction activities. Therefore, principles and requirements of green building certification systems can easily be performed for projects with capabilities of BIM technologies and tools. In this study, redesign of Yildiz Technical University, Faculty of Civil Engineering Building based on LEED certification system using BIM tools is presented. The project is prepared as part of a capstone project by senior civil engineering students. Design stages are planned to promote sustainability and qualify the requirements of LEED v3 BD+C (Schools). The main objective is to introduce the students to two major trends in construction industry (green buildings and BIM applications) and to create awareness of sustainable construction, green building certification systems and emerging technologies.